Abstract
<jats:title>Abstract</jats:title> <jats:p>Isopods are an order of crustaceans characterised by a biphasic moulting pattern, in which the posterior cuticle is shed before the anterior cuticle, with an intramoult period of up to a few days between the two. In order to understand how this unusual moulting pattern is regulated, we carried out a transcriptomic analysis covering three distantly related terrestrial isopod species. We analysed the transcriptomic profile of four body regions: the front legs, the hind legs, the thorax and the head, at different phases of the moulting cycle in the three species. We describe a conserved cyclic pattern in the transcriptomic profiles corresponding to the phases of the moulting cycle. The genes driving this conserved pattern provide a catalogue of the central players of the moulting process and are prime candidates for future experimental work. Furthermore, we show that during the intramoult phase, the posterior limbs display a transcriptomic profile more similar to the postmoult phase, indicating that at this phase, the animal is functionally a transcriptomic chimera, with the anterior and posterior halves experiencing radically different molecular environments, with disjunct regulatory programmes active in each half.</jats:p>