Abstract
<jats:p><p>Characterization of ErlR and AfaR HNSCC cell models. <b>A</b> and <b>B,</b> Dose response curves for (<b>A</b>) Fadu and (<b>B</b>) Cal27 parental, ErlR, or AfaR cell lines treated with the indicated dose range of afatinib or erlotinib for 72 hours. <b>C,</b> Representative Western blot images for active RTKs EGFR, MET, and HER2. <b>D,</b> Quantification of Western blots shown in <b>C</b>, with values normalized to those in parental cell lines. Graphs display baseline activation relative to total levels of each protein, based on <i>n</i> = 3. Note that for some proteins analyzed (e.g., MET), there was a significant intensity difference between FaDu and Cal27 models. For these cases, multiple exposures were taken for the relevant data, and quantification was performed based on primary Western blot data within a linear signal range. <b>E,</b> GSEA comparing Fadu and Cal27 AfaR or ErlR vs. Fadu and Cal27 parental cells, as indicated. RNA-seq analysis shown is averaged from two biological replicates. <b>F</b> and <b>G,</b> Representative Western blot images (<b>F</b>) and quantification (<b>G</b>) for indicated biomarkers of epithelial identity or EMT, based on <i>n</i> = 3 biological repeats. Bar graphs display data normalized for each parental cell line. <i>P</i> values are based on one-way ANOVA followed by Tukey multiple comparison test. *, <i>P</i> ≤ 0.05; **, <i>P</i> ≤ 0.001; ****, <i>P</i> ≤ 0.0001. Data are shown as mean ± SEM of three biological replicates. ES, enrichment score.</p></jats:p>